STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degSUnannotated protein. (376 aa)    
Predicted Functional Partners:
O23A_p4460
Unannotated protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degradi [...]
  
 
 0.920
glpK
Unannotated protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.907
C5B76_16480
Unannotated protein; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
    
 
 0.830
GCA_000315855_00361
Unannotated protein.
    
 
 0.830
rplI
Unannotated protein; Binds to the 23S rRNA.
 
 
 
 0.777
C5B76_19695
Unannotated protein.
    
 
 0.772
rpsI
Unannotated protein; Belongs to the universal ribosomal protein uS9 family.
   
   0.732
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.727
O23A_p2379
Unannotated protein.
  
  
 0.727
GCA_000315855_02829
Unannotated protein.
  
 
 
 0.715
Your Current Organism:
Aeromonas salmonicida achromogenes
NCBI taxonomy Id: 1233098
Other names: A. salmonicida subsp. achromogenes AS03, Aeromonas salmonicida subsp. achromogenes AS03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.