STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC43311.1Two-component system, OmpR family, response regulator. (229 aa)    
Predicted Functional Partners:
SKC43301.1
Two-component system, OmpR family, sensor kinase.
 
  0.981
SKC43137.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
  0.953
SKC63151.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.930
SKC41603.1
Two-component system, OmpR family, sensor kinase.
 
  0.917
SKC60205.1
Signal transduction histidine kinase.
 
  0.894
SKC41540.1
GAF sensor signal transduction histidine kinase.
 
 0.866
SKC68483.1
Signal transduction histidine kinase.
 
  0.866
SKC44843.1
Signal transduction histidine kinase.
 
  0.864
SKC39828.1
PAS fold-containing protein.
 
  0.861
SKC35460.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 
 0.708
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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