STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC44837.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (224 aa)    
Predicted Functional Partners:
SKC44843.1
Signal transduction histidine kinase.
  0.969
SKC43137.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
  0.941
SKC41603.1
Two-component system, OmpR family, sensor kinase.
 
  0.904
SKC63151.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.896
SKC43301.1
Two-component system, OmpR family, sensor kinase.
  
  0.890
SKC60205.1
Signal transduction histidine kinase.
 
  0.816
SKC68483.1
Signal transduction histidine kinase.
 
  0.809
SKC39828.1
PAS fold-containing protein.
 
  0.803
SKC41540.1
GAF sensor signal transduction histidine kinase.
 
 0.776
SKC35460.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 0.741
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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