STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC45399.1Uncharacterized conserved protein YafD, endonuclease/exonuclease/phosphatase (EEP) superfamily. (359 aa)    
Predicted Functional Partners:
SKC45389.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
       0.598
SKC45407.1
Hypothetical protein.
       0.589
SKC63232.1
Hypothetical protein; Manually curated.
  
     0.569
SKC44519.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.529
SKC43328.1
Helicase conserved C-terminal domain-containing protein.
  
     0.528
SKC64752.1
HlyD family secretion protein.
  
     0.519
SKC48128.1
Hypothetical protein.
  
     0.512
SKC38367.1
Hypothetical protein.
  
     0.465
SKC43271.1
LytR cell envelope-related transcriptional attenuator.
  
     0.456
SKC52412.1
Major Facilitator Superfamily protein.
  
     0.416
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.