STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC53812.1Threonine/homoserine/homoserine lactone efflux protein. (223 aa)    
Predicted Functional Partners:
SKC42293.1
Hypothetical protein.
 
     0.746
SKC67249.1
Hypothetical protein.
 
    0.673
SKC53827.1
Pyridoxamine 5'-phosphate oxidase.
       0.626
SKC35872.1
Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily.
  
     0.508
SKC49571.1
Dienelactone hydrolase.
 
     0.508
SKC67573.1
Ig-like domain (group 3).
  
     0.489
SKC52133.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.463
SKC53796.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
       0.448
SKC42776.1
Hypothetical protein.
  
     0.445
SKC69250.1
CAAX protease self-immunity.
  
     0.409
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.