STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC60081.1Beta-galactosidase. (593 aa)    
Predicted Functional Partners:
SKC36943.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.911
SKC68935.1
Alpha-galactosidase.
 
  
 0.877
SKC68949.1
Beta-galactosidase.
 
  
  0.872
SKC42771.1
Aldose 1-epimerase.
  
 
 0.862
SKC60706.1
Hypothetical protein.
  
 0.814
SKC60073.1
alpha-N-arabinofuranosidase.
       0.776
SKC60063.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.735
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
 
      0.691
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
 
      0.674
SKC60087.1
LPXTG-motif cell wall anchor domain-containing protein.
 
  0.663
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.