STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC62613.1Signal transduction histidine kinase. (434 aa)    
Predicted Functional Partners:
SKC62625.1
Hypothetical protein.
     0.955
SKC62604.1
Two component transcriptional regulator, LuxR family.
 
  0.923
SKC62582.1
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.726
SKC63432.1
Two component transcriptional regulator, LuxR family.
 
  0.592
SKC62570.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.530
SKC62967.1
O-antigen ligase.
  
     0.493
SKC63446.1
Signal transduction histidine kinase.
 
    
0.429
SKC35984.1
Two component transcriptional regulator, LuxR family.
  
  0.422
SKC36871.1
Two component transcriptional regulator, LuxR family.
  
  0.422
SKC37869.1
Two component transcriptional regulator, LuxR family.
  
  0.422
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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