Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKC36589.1 | SKC53630.1 | SAMN06309945_0223 | SAMN06309945_1767 | Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein. | Hypothetical protein. | 0.428 |
SKC36589.1 | SKC67631.1 | SAMN06309945_0223 | SAMN06309945_2534 | Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein. | Protein of unknown function. | 0.450 |
SKC36589.1 | SKC67636.1 | SAMN06309945_0223 | SAMN06309945_2535 | Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.419 |
SKC50491.1 | SKC53630.1 | SAMN06309945_1523 | SAMN06309945_1767 | Conserved repeat domain-containing protein. | Hypothetical protein. | 0.428 |
SKC50491.1 | SKC67631.1 | SAMN06309945_1523 | SAMN06309945_2534 | Conserved repeat domain-containing protein. | Protein of unknown function. | 0.437 |
SKC50491.1 | SKC67636.1 | SAMN06309945_1523 | SAMN06309945_2535 | Conserved repeat domain-containing protein. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.426 |
SKC53630.1 | SKC36589.1 | SAMN06309945_1767 | SAMN06309945_0223 | Hypothetical protein. | Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein. | 0.428 |
SKC53630.1 | SKC50491.1 | SAMN06309945_1767 | SAMN06309945_1523 | Hypothetical protein. | Conserved repeat domain-containing protein. | 0.428 |
SKC53630.1 | SKC67631.1 | SAMN06309945_1767 | SAMN06309945_2534 | Hypothetical protein. | Protein of unknown function. | 0.428 |
SKC53630.1 | SKC67636.1 | SAMN06309945_1767 | SAMN06309945_2535 | Hypothetical protein. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.450 |
SKC63284.1 | SKC67636.1 | SAMN06309945_2256 | SAMN06309945_2535 | Mycothiol system anti-sigma-R factor. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.602 |
SKC67631.1 | SKC36589.1 | SAMN06309945_2534 | SAMN06309945_0223 | Protein of unknown function. | Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein. | 0.450 |
SKC67631.1 | SKC50491.1 | SAMN06309945_2534 | SAMN06309945_1523 | Protein of unknown function. | Conserved repeat domain-containing protein. | 0.437 |
SKC67631.1 | SKC53630.1 | SAMN06309945_2534 | SAMN06309945_1767 | Protein of unknown function. | Hypothetical protein. | 0.428 |
SKC67631.1 | SKC67636.1 | SAMN06309945_2534 | SAMN06309945_2535 | Protein of unknown function. | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | 0.596 |
SKC67631.1 | SKC67643.1 | SAMN06309945_2534 | SAMN06309945_2536 | Protein of unknown function. | methylated-DNA-[protein]-cysteine S-methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. | 0.412 |
SKC67636.1 | SKC36589.1 | SAMN06309945_2535 | SAMN06309945_0223 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein. | 0.419 |
SKC67636.1 | SKC50491.1 | SAMN06309945_2535 | SAMN06309945_1523 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved repeat domain-containing protein. | 0.426 |
SKC67636.1 | SKC53630.1 | SAMN06309945_2535 | SAMN06309945_1767 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.450 |
SKC67636.1 | SKC63284.1 | SAMN06309945_2535 | SAMN06309945_2256 | RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. | Mycothiol system anti-sigma-R factor. | 0.602 |
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