STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC69211.1Threonine dehydrogenase. (344 aa)    
Predicted Functional Partners:
SKC53210.1
PTS system D-fructose-specific IIA component (F1P-forming), Frc family /PTS system D-fructose-specific IIB component (F1P-forming), Frc family /PTS system D-fructose-specific IIC component (F1P-forming), Frc family.
  
 
  0.776
SKC69213.1
Cupin domain protein.
 
     0.742
SKC69219.1
4-carboxymuconolactone decarboxylase.
  
    0.707
SKC35767.1
PTS system, beta-glucosides-specific IIC component.
   
 
 0.659
SKC39776.1
L-iditol 2-dehydrogenase.
 
    
0.628
SKC40586.1
Phosphoglucomutase.
   
  0.624
SKC53999.1
Alcohol dehydrogenase, propanol-preferring.
  
 
0.585
SKC51539.1
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
  0.578
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
   
 0.574
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.569
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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