STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC69322.1FAD dependent oxidoreductase. (541 aa)    
Predicted Functional Partners:
SKC63309.1
2-oxoglutarate dehydrogenase E1 component.
  
 0.984
SKC62332.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 0.978
SKC62361.1
Succinate dehydrogenase subunit C.
  
 0.977
SKC69317.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.936
SKC35111.1
Glycine/D-amino acid oxidase.
  
 0.891
SKC69312.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.879
SKC62350.1
Succinate dehydrogenase subunit D.
  
 0.861
SKC69284.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
     0.859
SKC69272.1
Transcriptional regulator, LacI family.
 
 
   0.816
SKC45270.1
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 0.774
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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