STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC69483.1D-threo-aldose 1-dehydrogenase. (329 aa)    
Predicted Functional Partners:
SKC69451.1
L-fuconolactonase.
  
  0.938
SKC69480.1
L-fuconate dehydratase.
    0.913
SKC60967.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
  
  0.831
SKC69474.1
L-rhamnose mutarotase.
     0.830
SKC61004.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
  0.775
SKC69425.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  
  0.748
SKC60823.1
UDPglucose 6-dehydrogenase.
   
 
  0.714
SKC46115.1
Histidinol-phosphate phosphatase.
   
 
  0.660
SKC69430.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
     0.444
SKC35476.1
MIP family channel proteins; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.422
Your Current Organism:
Okibacterium fritillariae
NCBI taxonomy Id: 123320
Other names: Curtibacterium sp. VKM Ac-2059, Curtibacterium sp. VKM Ac-2062, Curtobacterium sp. VKM Ac-2059, Curtobacterium sp. VKM Ac-2062, IFO 16404, JCM 12284, NBRC 16404, O. fritillariae, Okibacterium fritillariae Evtushenko et al. 2002, VKM Ac-2059
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