STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO90_15420Thiamine biosynthesis protein ThiJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
IO90_07865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
  0.603
IO90_15415
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.504
IO90_01260
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.
   
  0.467
katE
Hydroperoxidase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  0.467
katE-2
Hydroperoxidase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  0.467
IO90_02320
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.445
IO90_15410
DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.427
Your Current Organism:
Chryseobacterium sp. FH1
NCBI taxonomy Id: 1233951
Other names: C. sp. FH1, Epilithonimonas sp. FH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.