STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IO90_17980TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)    
Predicted Functional Partners:
IO90_11040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.644
IO90_17210
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.597
IO90_12660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.543
IO90_17480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.543
IO90_02340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.526
IO90_03755
Ferric siderophore ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.498
IO90_08225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.498
IO90_08320
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.464
IO90_15110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.459
IO90_17985
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BI1 family.
       0.435
Your Current Organism:
Chryseobacterium sp. FH1
NCBI taxonomy Id: 1233951
Other names: C. sp. FH1, Epilithonimonas sp. FH1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.