STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C683_0006Polysaccharide biosynthesis protein. (510 aa)    
Predicted Functional Partners:
C683_0007
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit; S4 paralog.
  
    0.851
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.836
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.812
C683_0008
Hypothetical protein.
 
     0.792
C683_0009
RNA binding protein; Contains ribosomal protein S1 domain.
 
     0.723
C683_1179
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.611
C683_0091
Hypothetical protein.
  
     0.600
mltG
YceG-like protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
    0.573
C683_0752
Nucleoside deoxyribosyltransferase.
  
     0.543
C683_0003
Putative ErfK/YbiS/YcfS/YnhG family protein.
       0.538
Your Current Organism:
Catellicoccus marimammalium
NCBI taxonomy Id: 1234409
Other names: C. marimammalium M35/04/3, Catellicoccus marimammalium M35/04/3
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.