STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0021Hypothetical protein. (336 aa)    
Predicted Functional Partners:
C725_2743
Glutamate synthase [NADPH] large chain.
    
  0.896
C725_0450
Plastocyanin/azurin family domain protein.
   
   0.889
C725_2954
Putative Isoquinoline 1-oxidoreductase.
 
 0.786
C725_0381
Cytochrome c oxidase polypeptide II.
  
 0.729
C725_0377
ABC-type Fe3+ transport system protein.
  
  0.721
C725_0399
Hypothetical protein.
  
  0.721
C725_0400
ABC-type Fe3+ transport system protein.
  
  0.721
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.683
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.632
C725_2811
Oxidoreductase (flavoprotein).
    
  0.622
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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