STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0069Diguanylate cyclase. (652 aa)    
Predicted Functional Partners:
C725_2087
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.979
C725_0431
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
0.977
C725_2611
Multi-sensor hybrid histidine kinase.
 0.972
C725_2610
Sensor histidine kinase/response regulator.
 
 
 0.970
C725_2653
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.963
C725_1527
Signal transduction histidine kinase CheA.
 
 
 0.962
C725_0223
Diguanylate cyclase/phosphodiesterase.
 0.961
C725_2888
Diguanylate cyclase.
 
 0.957
C725_2500
Sensory box histidine kinase/response regulator.
 
 
 0.954
C725_1167
Chemotaxis protein methyltransferase CheR.
 
 0.953
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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