STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0145Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR. (734 aa)    
Predicted Functional Partners:
C725_0143
Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT.
 0.999
C725_0744
Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT.
 0.997
C725_0535
Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT.
 0.996
C725_0144
Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS.
 0.993
C725_0733
Carbon monoxide dehydrogenase small chain.
 0.983
C725_0534
Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS.
 0.981
C725_0743
Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS.
 0.966
C725_2953
Isoquinoline 1-oxidoreductase alpha subunit.
 
  0.953
C725_0694
Isoquinoline 1-oxidoreductase alpha subunit.
 
  0.952
C725_0734
Carbon monoxide dehydrogenase medium chain.
 
 0.806
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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