STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0342Ribose transport system permease protein rbsC. (388 aa)    
Predicted Functional Partners:
C725_0340
Periplasmic binding protein/LacI transcriptional regulator.
 0.999
C725_0341
ABC transporter protein, ATP binding component.
 0.999
C725_0343
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE.
 
   
 0.878
C725_0363
Transcriptional regulator, LacI family.
 
 
 0.814
C725_0344
Oxidoreductase, Gfo/Idh/MocA family.
  
    0.673
C725_0346
Beta-galactosidase.
 
    0.659
C725_0338
L-carnitine dehydratase/bile acid-inducible protein F.
       0.654
C725_0339
Aldehyde dehydrogenase.
       0.587
C725_0345
2-keto-3-deoxy-L-fuconate dehydrogenase.
       0.568
C725_0347
Alpha-L-fucosidase.
       0.540
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.