STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0371TRAP-type transport system, small permease component, N-acetylneuraminate transporter. (216 aa)    
Predicted Functional Partners:
C725_0370
TRAP-type C4-dicarboxylate transport system, large permease component.
 
 0.998
C725_0372
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.984
C725_0369
TonB-dependent receptor.
 
     0.569
C725_0366
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase.
 
     0.508
C725_0362
2-keto-4-pentenoate hydratase.
 
     0.469
C725_0502
YjeF protein, function unknown.
      
 0.407
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.