STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0516Anthranilate synthase, aminase component. (501 aa)    
Predicted Functional Partners:
C725_0517
Anthranilate synthase, amidotransferase component.
 0.999
C725_0518
Anthranilate phosphoribosyltransferase.
 0.999
trpC
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
 0.999
C725_1911
Phosphoribosylanthranilate isomerase.
 
 
 0.975
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
  
 0.965
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
 
 0.960
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
 
  
 0.950
C725_2144
Para-aminobenzoate synthase, aminase component.
 
 
0.908
C725_1954
Chorismate mutase I.
  
 
 0.881
C725_1017
Shikimate 5-dehydrogenase I alpha.
 
 
 0.838
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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