STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0544Hypothetical protein. (62 aa)    
Predicted Functional Partners:
C725_0545
Hypothetical protein.
 
  
 0.988
C725_0541
Putative signal peptide protein.
 
  
 0.950
C725_0543
Hypothetical protein.
 
     0.943
C725_0540
Integral membrane protein.
 
  
 0.905
C725_0431
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
   
    0.555
C725_2782
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
   
    0.465
C725_1649
Hypothetical protein.
   
    0.459
C725_0542
Hypothetical protein.
       0.457
C725_0670
Hypothetical protein.
   
    0.448
C725_0539
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.428
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.