STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0596Quinone oxidoreductase. (335 aa)    
Predicted Functional Partners:
C725_0886
3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 
 0.918
C725_3024
Malonyl CoA-acyl carrier protein transacylase.
 
   
 0.860
C725_0729
Long-chain-fatty-acid--CoA ligase.
 
   
  0.787
C725_0899
2-oxoglutarate oxidoreductase, alpha subunit.
     
 0.621
C725_1791
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.603
C725_2054
Enoyl-CoA hydratase.
  
 0.603
C725_0597
Hypothetical protein.
       0.575
C725_2557
Hypothetical protein.
 
   0.548
C725_0595
Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase.
       0.528
C725_0594
Glycosyltransferase.
    
  0.523
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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