STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0789Hypothetical protein. (434 aa)    
Predicted Functional Partners:
C725_0786
Riboflavin kinase; Belongs to the ribF family.
       0.773
C725_0787
Microsomal dipeptidase.
       0.773
C725_0788
Dihydrofolate reductase.
       0.773
C725_0783
Succinylglutamic semialdehyde dehydrogenase.
    
  0.765
C725_0782
Succinylarginine dihydrolase.
       0.762
C725_0784
Arginine N-succinyltransferase.
       0.762
C725_0785
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
       0.762
rpmE
LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
    0.602
C725_0790
Thymidylate synthase.
       0.543
rpmJ
LSU ribosomal protein L36p; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.530
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.