STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_0923rRNA small subunit methyltransferase I. (280 aa)    
Predicted Functional Partners:
C725_0924
Hypothetical protein.
       0.854
C725_0922
Extracellular ligand-binding receptor.
 
   0.788
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
       0.765
C725_1415
tRNA-specific adenosine-34 deaminase.
 
    0.654
C725_1006
rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB.
 
   
 0.574
C725_2895
LSU methyltransferase RlmH.
 
   
 0.548
C725_0052
Ribosomal protein L11 methyltransferase.
 
  
 0.547
C725_1756
Alanine racemase.
 
   0.527
C725_2414
Cell division protein FtsZ.
  
   
 0.515
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
     0.486
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.