STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_1005Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj. (257 aa)    
Predicted Functional Partners:
C725_1004
Chromosome (plasmid) partitioning protein ParB; Stage 0 sporulation protein J.
 
 0.998
C725_1006
rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB.
  
  
 0.885
C725_1007
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA.
       0.766
C725_1008
GTPase and tRNA-U34 5-formylation enzyme TrmE.
  
    0.702
C725_1009
Hypothetical protein.
       0.702
C725_2965
Chromosome (plasmid) partitioning protein ParB.
  
 
 0.678
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.676
C725_0943
Cell division protein FtsK.
  
  
 0.638
C725_0771
Phage integrase.
  
   
 0.461
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.434
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.