STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_1116Surface lipoprotein. (340 aa)    
Predicted Functional Partners:
C725_0721
Mammalian cell entry related domain protein.
 
   
 0.829
C725_2051
Toluene tolerance family protein.
 
 
 
 0.827
C725_1117
Transcriptional regulator, ArsR family / Methyltransferase fusion.
       0.644
C725_1118
5,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.644
C725_1119
Putative methyltransferase.
       0.643
C725_1120
5-methyltetrahydrofolate--homocysteine methyltransferase.
       0.607
C725_1755
ABC transporter, inner membrane subunit.
 
   
 0.504
C725_1754
Methionine ABC transporter ATP-binding protein.
 
   
 0.495
C725_0480
Membrane-bound lytic murein transglycosylase B precursor.
  
    0.490
C725_1115
Hypothetical protein.
       0.485
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.