STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_1182Glycosyltransferase. (371 aa)    
Predicted Functional Partners:
C725_1183
Putative glycosyl transferase.
    0.969
C725_1185
UDP-glucose 4-epimerase.
 
    0.966
C725_1181
Hypothetical protein.
 
     0.964
C725_1184
Nucleoside-diphosphate-sugar epimerase.
 
    0.956
C725_1188
Methyltransferase type 11.
 
     0.883
C725_1189
Beta-xylosidase.
 
     0.883
C725_1191
Threonine dehydrogenase.
 
     0.869
C725_1180
Hypothetical protein.
 
    
0.868
C725_1192
Oxidoreductase-like protein.
 
     0.834
C725_1179
dTDP-glucose 4,6-dehydratase.
 
    0.812
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.