STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_1274Urocanate hydratase. (527 aa)    
Predicted Functional Partners:
C725_1273
Histidine ammonia-lyase.
 
 0.991
C725_1276
Imidazolonepropionase.
 
 0.973
C725_1281
Imidazolonepropionase.
 
 0.965
C725_1280
Histidine ammonia-lyase.
 
 0.963
C725_1272
N-formylglutamate deformylase.
  
  
 0.820
C725_1275
Formiminoglutamic iminohydrolase.
 
  
 0.646
C725_0851
TolB protein precursor.
  
 
 0.605
C725_0672
Hypothetical protein.
  
 
  0.550
C725_1384
Amidohydrolase family protein.
  
 
  0.550
C725_1472
Hypothetical protein.
  
 
  0.550
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.