STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_1343Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A. (238 aa)    
Predicted Functional Partners:
C725_1344
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
 0.999
C725_1791
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.942
C725_2054
Enoyl-CoA hydratase.
  
 
 0.942
C725_0798
Hydroxymethylglutaryl-CoA lyase.
  
 
 0.917
C725_1426
Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.887
C725_1433
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.887
C725_0990
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.885
C725_1567
Acetoacetyl-CoA reductase.
 
 
 
  0.864
C725_2432
acetyl-CoA acetyltransferase.
  
 
 0.842
C725_1618
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.689
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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