STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_1701General secretion pathway protein I. (120 aa)    
Predicted Functional Partners:
C725_1702
General secretion pathway protein J.
 
 0.999
C725_1703
General secretion pathway protein K.
 
 
 0.998
C725_1697
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.980
C725_1698
General secretion pathway protein F.
 
  
 0.971
C725_1696
General secretion pathway protein D.
 
  
 0.945
C725_1695
General secretion pathway protein C.
 
  
 0.931
C725_1700
General secretion pathway protein H.
  
 
 0.883
C725_1699
General secretion pathway protein G.
 
  
 0.882
C725_1704
General secretion pathway protein L.
  
  
 0.841
C725_1705
Hypothetical protein.
  
  
 0.838
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.