STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2017Dihydroneopterin aldolase. (121 aa)    
Predicted Functional Partners:
C725_1710
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.
  
 
 0.996
C725_2880
Dihydropteroate synthase.
  
 
 0.994
folE
GTP cyclohydrolase I.
  
 
 0.976
C725_0581
Alkaline phosphatase, putative.
     
 0.892
C725_2016
FolM Alternative dihydrofolate reductase 1.
    
  0.829
C725_1907
Dihydrofolate synthase.
  
 
 0.827
C725_2597
Diaminohydroxyphosphoribosylaminopyrimidine deaminase.
  
  
 0.641
C725_2144
Para-aminobenzoate synthase, aminase component.
  
 
 0.636
C725_0071
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
  
  
 0.631
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.599
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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