STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2123Methionine ABC transporter ATP-binding protein. (278 aa)    
Predicted Functional Partners:
C725_2124
ABC-type transport system permease component.
 0.996
C725_2122
ABC-type transport system periplasmic component.
 
 0.994
C725_0569
ABC-type transport system, permease component.
 
 0.984
C725_0567
ABC transporter, periplasmic substrate-binding protein, putative.
 
 0.971
C725_0721
Mammalian cell entry related domain protein.
  
 0.968
C725_1755
ABC transporter, inner membrane subunit.
 0.966
C725_2592
ABC-type multidrug transport system, ATPase component.
   
 
0.916
pstB
Phosphate transport ATP-binding protein PstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.898
C725_0864
RsbR, positive regulator of sigma-B.
   
  0.890
C725_0865
RsbS, negative regulator of sigma-B.
   
  0.890
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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