STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2208FAD/FMN-containing dehydrogenase. (277 aa)    
Predicted Functional Partners:
C725_2207
Hypothetical protein.
 
   0.997
C725_2210
Host specificity protein.
 
 
   0.996
C725_2211
Hypothetical protein.
 
 
   0.985
C725_2203
Agent tail protein.
 
 
   0.984
C725_2196
Phage major capsid protein.
 
 
   0.961
C725_2193
Phage portal protein.
 
 
   0.952
C725_2199
Hypothetical protein.
 
 
   0.947
C725_2206
Hypothetical protein.
 
     0.934
C725_2195
Phage prohead protease, HK97 family.
 
     0.873
C725_2204
Hypothetical protein.
       0.854
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.