STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2219Low molecular weight protein tyrosine phosphatase. (155 aa)    
Predicted Functional Partners:
C725_2809
Hydrolase.
  
 
 0.952
C725_2967
Metallo-beta-lactamase family protein.
  
 
 0.952
C725_0951
Thioredoxin domain-containing protein EC-YbbN.
  
 
 0.902
C725_2345
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.902
C725_0015
Sugar transferase.
  
 
 0.846
C725_0892
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
  
   0.792
C725_2497
ABC-type multidrug transport system ATPase component.
   
   0.747
C725_1832
Metal-dependent hydrolase.
  
   0.713
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.705
C725_0978
Chalcone synthase.
    
   0.703
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.