STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2769RND efflux system, outer membrane lipoprotein CmeC. (455 aa)    
Predicted Functional Partners:
C725_2770
RND efflux system, inner membrane transporter CmeB.
  0.936
C725_2771
Co/Zn/Cd efflux system membrane fusion protein.
 
 0.903
C725_2668
RND efflux system, inner membrane transporter CmeB.
 
  0.853
C725_2669
RND efflux system, membrane fusion protein CmeA.
 
  0.813
C725_0136
Membrane fusion component of tripartite multidrug resistance system.
 
  0.629
C725_2807
Heavy metal RND efflux outer membrane protein, CzcC family.
  
  
 
0.604
C725_2768
TonB-dependent receptor.
       0.566
C725_1332
Membrane fusion component of tripartite multidrug resistance system.
   
  0.539
C725_2825
Membrane fusion component of tripartite multidrug resistance system.
   
  0.539
C725_3041
Membrane fusion component of tripartite multidrug resistance system.
   
  0.539
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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