STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2920Signal transduction histidine kinase. (438 aa)    
Predicted Functional Partners:
C725_2043
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.986
C725_2610
Sensor histidine kinase/response regulator.
 
 0.980
C725_1582
Phytochrome, two-component sensor histidine kinase.
   
 0.956
C725_2609
Pole remodelling regulatory diguanylate cyclase.
 
 0.893
C725_2611
Multi-sensor hybrid histidine kinase.
 
 
0.893
C725_2063
DNA-binding response regulator.
  0.888
C725_2134
Sensor histidine kinase ChvG.
 
 
 0.887
C725_2549
Two component transcriptional regulator, winged helix family.
  0.887
C725_0166
Phosphate regulon transcriptional regulatory protein PhoB (SphR).
 
  0.854
C725_1166
Response regulator receiver.
   
 0.844
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
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