STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C725_2973Amino acid permease. (427 aa)    
Predicted Functional Partners:
C725_2088
Maltodextrin glucosidase.
   
 0.983
C725_2971
Kef-type K+ transport system NAD-binding component.
 
     0.710
C725_0825
NAD synthetase.
    
 0.666
C725_2972
Hypothetical protein.
 
    0.522
C725_2975
Putative methyltransferase.
 
     0.462
C725_2970
Hypothetical protein; Involved in heavy metal export.
 
     0.437
C725_1017
Shikimate 5-dehydrogenase I alpha.
   
 0.435
C725_2610
Sensor histidine kinase/response regulator.
   
 
 0.435
C725_2982
Hypothetical protein.
 
     0.424
C725_2743
Glutamate synthase [NADPH] large chain.
  
  
 0.423
Your Current Organism:
Pacificimonas flava
NCBI taxonomy Id: 1234595
Other names: CGMCC 1.12401, LMG 27364, LMG:27364, P. flava, Pacificamonas flava, Pacificimonas flava corrig. Liu et al. 2016, alpha proteobacterium JLT2015, strain JLT2015
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.