STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARP98428.1Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
ARP98427.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
0.985
ARP98429.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.975
ARQ02741.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.962
ARP98430.1
Squalene--hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
ARP98431.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.905
ARQ00244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.725
ARQ02296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.708
ARQ00395.1
MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.693
ARP98367.1
Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.691
ARP98675.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.688
Your Current Organism:
Pseudorhodoplanes sinuspersici
NCBI taxonomy Id: 1235591
Other names: CECT 8374, IBRC-M 10770, P. sinuspersici, Pseudorhodoplanes sinuspersici Tirandaz et al. 2015, bacterium C16-RIPI 110, strain RIPI 110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.