STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ01285.1Gentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)    
Predicted Functional Partners:
ARQ01434.1
Ribonuclease activity regulator RraA; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.849
ARQ01284.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.509
ARQ01286.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.496
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.453
ARQ01283.1
Aliphatic nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.406
Your Current Organism:
Pseudorhodoplanes sinuspersici
NCBI taxonomy Id: 1235591
Other names: CECT 8374, IBRC-M 10770, P. sinuspersici, Pseudorhodoplanes sinuspersici Tirandaz et al. 2015, bacterium C16-RIPI 110, strain RIPI 110
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