STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C818_00553Aspartate kinase; Belongs to the aspartokinase family. (402 aa)    
Predicted Functional Partners:
C818_02785
Aspartate-semialdehyde dehydrogenase; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.988
C818_00555
Hypothetical protein.
 0.974
C818_03062
Methionine synthase.
  
 
 0.935
C818_03144
Asparagine synthase (glutamine-hydrolyzing).
  
 
 0.879
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
 
 0.868
C818_04159
Aspartate aminotransferase.
  
 0.867
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 
  0.854
C818_01287
L-asparaginase, type I.
     
 0.833
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.828
C818_00723
Threonine synthase.
  
 
 0.810
Your Current Organism:
Lachnospiraceae bacterium MD308
NCBI taxonomy Id: 1235799
Other names: L. bacterium MD308, Lachnospiraceae bacterium 3-2
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