STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW34145.1TonB-linked outer membrane protein, SusC/RagA family. (1080 aa)    
Predicted Functional Partners:
SDW34118.1
Starch-binding associating with outer membrane.
 
     0.932
SDW62495.1
WD40-like Beta Propeller Repeat.
  
  
  0.751
SDW73981.1
Starch-binding associating with outer membrane.
  
     0.716
SDX51760.1
Outer membrane receptor proteins, mostly Fe transport.
  
    0.692
SDW06133.1
Starch-binding associating with outer membrane.
  
     0.681
SDX45153.1
SusD family protein.
  
  
  0.640
SDX22122.1
Glycosyl hydrolase family 76.
  
     0.636
SDX10686.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
  
  0.634
SDW40410.1
Starch-binding associating with outer membrane.
  
     0.632
SDW74886.1
Starch-binding associating with outer membrane.
 
     0.632
Your Current Organism:
Hydrobacter penzbergensis
NCBI taxonomy Id: 1235997
Other names: CCUG 62278, Chitinophagaceae bacterium EM 4, DSM 25353, H. penzbergensis, Hydrobacter penzbergensis Eder et al. 2015, strain EM 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.