STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW50591.1Bacteroides conjugative transposon TraJ protein. (402 aa)    
Predicted Functional Partners:
SDW50632.1
Hypothetical protein.
 
     0.946
SDW50667.1
Hypothetical protein.
 
     0.946
SDW50710.1
Hypothetical protein.
 
     0.946
SDW50789.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.946
SDW50550.1
Bacteroides conjugative transposon TraK protein.
 
   
 0.936
SDW50475.1
Bacteroides conjugative transposon TraM protein.
 
     0.934
SDW50434.1
Bacteroides conjugative transposon TraN protein.
 
     0.914
SDW50870.1
Protein of unknown function.
 
     0.911
SDW50911.1
SNF2 family N-terminal domain-containing protein.
 
     0.888
SDW50992.1
Protein of unknown function.
 
     0.878
Your Current Organism:
Hydrobacter penzbergensis
NCBI taxonomy Id: 1235997
Other names: CCUG 62278, Chitinophagaceae bacterium EM 4, DSM 25353, H. penzbergensis, Hydrobacter penzbergensis Eder et al. 2015, strain EM 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.