STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW86266.1Protein N-acetyltransferase, RimJ/RimL family. (181 aa)    
Predicted Functional Partners:
SDW86228.1
Histidinol-phosphate aminotransferase.
    
  0.735
SDW86298.1
Acyl carrier protein.
       0.728
SDW86347.1
HAD-superfamily phosphatase, subfamily IIIC/FkbH-like domain-containing protein.
       0.728
SDW86377.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.723
SDW86409.1
Hexapeptide repeat of succinyl-transferase.
       0.723
SDX26709.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
  
  0.658
SDW09999.1
Glutamate synthase (NADH) large subunit.
   
 
 0.621
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.589
SDX09725.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.555
SDX16499.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
    
 0.514
Your Current Organism:
Hydrobacter penzbergensis
NCBI taxonomy Id: 1235997
Other names: CCUG 62278, Chitinophagaceae bacterium EM 4, DSM 25353, H. penzbergensis, Hydrobacter penzbergensis Eder et al. 2015, strain EM 4
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