STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX22533.1L-lactate dehydrogenase complex protein LldE. (239 aa)    
Predicted Functional Partners:
SDW21376.1
L-lactate dehydrogenase complex protein LldF.
  0.988
SDW74158.1
L-lactate dehydrogenase complex protein LldF.
  0.988
SDX44401.1
L-lactate dehydrogenase complex protein LldF.
  0.988
SDW70408.1
L-lactate dehydrogenase complex protein LldG.
 
   0.881
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
       0.790
SDX22507.1
Predicted RNA-binding protein, contains PUA-like domain.
       0.784
SDX22583.1
Tetratricopeptide repeat-containing protein.
       0.783
SDW09999.1
Glutamate synthase (NADH) large subunit.
    
  0.775
SDW21323.1
L-lactate dehydrogenase complex protein LldG.
 
   0.753
pdhA
Pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
    
  0.733
Your Current Organism:
Hydrobacter penzbergensis
NCBI taxonomy Id: 1235997
Other names: CCUG 62278, Chitinophagaceae bacterium EM 4, DSM 25353, H. penzbergensis, Hydrobacter penzbergensis Eder et al. 2015, strain EM 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.