STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX23230.12',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-or 3'-nucleotidase, 5'-nucleotidase family; Belongs to the 5'-nucleotidase family. (504 aa)    
Predicted Functional Partners:
SDX23258.1
Hypothetical protein.
       0.664
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
       0.664
SDX33318.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
   
 
  0.612
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
    
  0.600
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.554
SDX10857.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
     
 0.535
SDX10890.1
Calcineurin-like phosphoesterase.
     
 0.535
SDW47347.1
Cytidine deaminase.
 
  
  0.531
SDX06234.1
GMP synthase-Glutamine amidotransferase.
  
  
  0.477
SDX23326.1
Hypothetical protein.
       0.465
Your Current Organism:
Hydrobacter penzbergensis
NCBI taxonomy Id: 1235997
Other names: CCUG 62278, Chitinophagaceae bacterium EM 4, DSM 25353, H. penzbergensis, Hydrobacter penzbergensis Eder et al. 2015, strain EM 4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.