STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI84979.1Putrescine transport ATP-binding protein PotA; TC 3.A.1.11.1. (361 aa)    
Predicted Functional Partners:
AGI84977.1
Molybdenum transport system permease protein ModB; TC 3.A.1.8.1.
    0.955
AGI84978.1
ABC transporter, ATP-binding protein.
 
  
 
0.877
AGI84981.1
Phosphomannomutase; Belongs to the phosphohexose mutase family.
 
     0.801
AGI84980.1
Hypothetical protein.
       0.800
AGI84976.1
Small nuclear ribonucleoprotein.
       0.699
smc
Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.543
AGI84974.1
Hypothetical protein.
       0.543
AGI84975.1
Hypothetical protein.
       0.543
cysS
Cysteinyl-tRNA synthetase.
 
    0.407
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.