STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI85038.1Hypothetical protein. (414 aa)    
Predicted Functional Partners:
AGI85136.1
Single-stranded-DNA-specific exonuclease RecJ.
  
     0.655
AGI85039.1
Adenine phosphoribosyltransferase.
 
     0.654
AGI85037.1
Hypothetical protein.
 
     0.648
rnp4
Ribonuclease P protein component 4; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
  
     0.605
AGI85807.1
Hypothetical protein.
  
     0.591
atpC
Hypothetical protein; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.564
AGI86390.1
NMD3.
  
     0.558
AGI85912.1
ATP-dependent RNA helicase-like eIF-4A.
  
     0.547
AGI86280.1
Putative single-stranded-DNA-specific exonuclease.
  
     0.533
AGI84895.1
Pantoate kinase, archaeal.
 
     0.524
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.