Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGI84985.1 | AGI84990.1 | MMALV_02290 | MMALV_02340 | rRNA biogenesis protein Nop5/Nop56. | RNA 3'-terminal phosphate cyclase. | 0.994 |
| AGI84985.1 | AGI86257.1 | MMALV_02290 | MMALV_15350 | rRNA biogenesis protein Nop5/Nop56. | Putative RNA-binding protein; COG1094. | 0.998 |
| AGI84985.1 | csl4 | MMALV_02290 | MMALV_01710 | rRNA biogenesis protein Nop5/Nop56. | RNA-binding protein, containing S1 domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.968 |
| AGI84985.1 | rps4 | MMALV_02290 | MMALV_03510 | rRNA biogenesis protein Nop5/Nop56. | SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
| AGI84985.1 | rps6e | MMALV_02290 | MMALV_01100 | rRNA biogenesis protein Nop5/Nop56. | SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.999 |
| AGI84985.1 | rrp4 | MMALV_02290 | MMALV_02990 | rRNA biogenesis protein Nop5/Nop56. | Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.936 |
| AGI84985.1 | rrp41 | MMALV_02290 | MMALV_02980 | rRNA biogenesis protein Nop5/Nop56. | Putative exosome complex exonuclease 1; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. | 0.910 |
| AGI84985.1 | rrp42 | MMALV_02290 | MMALV_02970 | rRNA biogenesis protein Nop5/Nop56. | Ribonuclease PH; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.960 |
| AGI84990.1 | AGI84985.1 | MMALV_02340 | MMALV_02290 | RNA 3'-terminal phosphate cyclase. | rRNA biogenesis protein Nop5/Nop56. | 0.994 |
| AGI84990.1 | AGI86257.1 | MMALV_02340 | MMALV_15350 | RNA 3'-terminal phosphate cyclase. | Putative RNA-binding protein; COG1094. | 0.975 |
| AGI84990.1 | csl4 | MMALV_02340 | MMALV_01710 | RNA 3'-terminal phosphate cyclase. | RNA-binding protein, containing S1 domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.960 |
| AGI84990.1 | rps4 | MMALV_02340 | MMALV_03510 | RNA 3'-terminal phosphate cyclase. | SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.991 |
| AGI84990.1 | rps6e | MMALV_02340 | MMALV_01100 | RNA 3'-terminal phosphate cyclase. | SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.997 |
| AGI84990.1 | rrp4 | MMALV_02340 | MMALV_02990 | RNA 3'-terminal phosphate cyclase. | Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.917 |
| AGI84990.1 | rrp41 | MMALV_02340 | MMALV_02980 | RNA 3'-terminal phosphate cyclase. | Putative exosome complex exonuclease 1; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. | 0.907 |
| AGI84990.1 | rrp42 | MMALV_02340 | MMALV_02970 | RNA 3'-terminal phosphate cyclase. | Ribonuclease PH; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.952 |
| AGI85051.1 | AGI86257.1 | MMALV_03000 | MMALV_15350 | Shwachman-Bodian-Diamond syndrome protein; predicted exosome subunit. | Putative RNA-binding protein; COG1094. | 0.569 |
| AGI85051.1 | rps4 | MMALV_03000 | MMALV_03510 | Shwachman-Bodian-Diamond syndrome protein; predicted exosome subunit. | SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.677 |
| AGI85051.1 | rps6e | MMALV_03000 | MMALV_01100 | Shwachman-Bodian-Diamond syndrome protein; predicted exosome subunit. | SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.566 |
| AGI85051.1 | rrp4 | MMALV_03000 | MMALV_02990 | Shwachman-Bodian-Diamond syndrome protein; predicted exosome subunit. | Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.835 |
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