STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI85530.1Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family. (387 aa)    
Predicted Functional Partners:
AGI85302.1
Hydroxymethylglutaryl-CoA synthase; Belongs to the thiolase-like superfamily. UPF0219 family.
 
 0.999
AGI85105.1
Mevalonate kinase.
 
 0.967
pheT
Phenylalanyl-tRNA synthetase beta chain.
       0.818
AGI85528.1
Peroxiredoxin.
       0.774
AGI85875.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
    
 
 0.607
AGI86176.1
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.550
fni
Isopentenyl-diphosphate delta-isomerase, FMN- dependent; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
   
 0.540
AGI84964.1
Polyprenyl synthase; Belongs to the FPP/GGPP synthase family.
 
 
 0.533
AGI85531.1
Hypothetical protein.
       0.524
AGI86363.1
Cell division protein FtsH.
 
  
 
 0.499
Your Current Organism:
Methanomethylophilus alvus
NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201
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