AGI85682.1 protein (Methanomethylophilus alvus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGI85682.1

Methanol methyltransferase corrinoid protein. (260 aa)

Predicted Functional Partners:

AGI85683.1

0.997

AGI85263.1

0.932

AGI85133.2

0.931

AGI85698.1

0.919

AGI85262.1

0.918

AGI85871.1

0.916

AGI85862.1

0.900

AGI85863.1

0.900

AGI85870.1

0.900

AGI85178.1

0.706

Your Current Organism:

Methanomethylophilus alvus

NCBI taxonomy Id: 1236689
Other names: C. Methanomethylophilus alvus Mx1201, Candidatus Methanomethylophilus alvus Mx1201, archaeon Mx1201

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGI85133.2	AGI85178.1	MMALV_03890	MMALV_04350	Methylcobalamin:coenzyme M methyltransferase.	Putative cobalamin binding protein.	0.687
AGI85133.2	AGI85262.1	MMALV_03890	MMALV_05200	Methylcobalamin:coenzyme M methyltransferase.	5-methyltetrahydrofolate--homocysteine methyltransferase.	0.922
AGI85133.2	AGI85263.1	MMALV_03890	MMALV_05210	Methylcobalamin:coenzyme M methyltransferase.	Methylcobalamin:coenzyme M methyltransferase.	0.903
AGI85133.2	AGI85682.1	MMALV_03890	MMALV_09460	Methylcobalamin:coenzyme M methyltransferase.	Methanol methyltransferase corrinoid protein.	0.931
AGI85133.2	AGI85683.1	MMALV_03890	MMALV_09470	Methylcobalamin:coenzyme M methyltransferase.	Methanol:corrinoid methyltransferase.	0.908
AGI85133.2	AGI85698.1	MMALV_03890	MMALV_09620	Methylcobalamin:coenzyme M methyltransferase.	Methylcobalamin:coenzyme M methyltransferase.	0.906
AGI85133.2	AGI85862.1	MMALV_03890	MMALV_11290	Methylcobalamin:coenzyme M methyltransferase.	Monomethylamine:corrinoid methyltransferase; Pyrrolysine-containing.	0.900
AGI85133.2	AGI85863.1	MMALV_03890	MMALV_11300	Methylcobalamin:coenzyme M methyltransferase.	Monomethylamine:corrinoid methyltransferase; Pyrrolysine-containing.	0.900
AGI85133.2	AGI85870.1	MMALV_03890	MMALV_11370	Methylcobalamin:coenzyme M methyltransferase.	Dimethylamine:corrinoid methyltransferase; Pyrrolysine-containing.	0.900
AGI85133.2	AGI85871.1	MMALV_03890	MMALV_11380	Methylcobalamin:coenzyme M methyltransferase.	Dimethylamine methyltransferase corrinoid protein.	0.912
AGI85178.1	AGI85133.2	MMALV_04350	MMALV_03890	Putative cobalamin binding protein.	Methylcobalamin:coenzyme M methyltransferase.	0.687
AGI85178.1	AGI85262.1	MMALV_04350	MMALV_05200	Putative cobalamin binding protein.	5-methyltetrahydrofolate--homocysteine methyltransferase.	0.910
AGI85178.1	AGI85263.1	MMALV_04350	MMALV_05210	Putative cobalamin binding protein.	Methylcobalamin:coenzyme M methyltransferase.	0.687
AGI85178.1	AGI85682.1	MMALV_04350	MMALV_09460	Putative cobalamin binding protein.	Methanol methyltransferase corrinoid protein.	0.706
AGI85178.1	AGI85683.1	MMALV_04350	MMALV_09470	Putative cobalamin binding protein.	Methanol:corrinoid methyltransferase.	0.803
AGI85178.1	AGI85698.1	MMALV_04350	MMALV_09620	Putative cobalamin binding protein.	Methylcobalamin:coenzyme M methyltransferase.	0.691
AGI85178.1	AGI85862.1	MMALV_04350	MMALV_11290	Putative cobalamin binding protein.	Monomethylamine:corrinoid methyltransferase; Pyrrolysine-containing.	0.900
AGI85178.1	AGI85863.1	MMALV_04350	MMALV_11300	Putative cobalamin binding protein.	Monomethylamine:corrinoid methyltransferase; Pyrrolysine-containing.	0.904
AGI85178.1	AGI85870.1	MMALV_04350	MMALV_11370	Putative cobalamin binding protein.	Dimethylamine:corrinoid methyltransferase; Pyrrolysine-containing.	0.900
AGI85178.1	AGI85871.1	MMALV_04350	MMALV_11380	Putative cobalamin binding protein.	Dimethylamine methyltransferase corrinoid protein.	0.907